Intricate artwork depicting genetic mutations within a brain network.

Unlocking Genetic Mysteries: How Advanced Sequencing Diagnosed a Rare Brain Disorder

"Decades-long diagnostic odyssey ends with a combination of microarray and exome sequencing, revealing insights into GM1-gangliosidosis."


GM1 gangliosidosis is a rare, inherited disorder where the body can't break down certain fatty substances, leading to a buildup that damages cells, especially in the brain and nervous system. It's typically classified into infantile, juvenile, and adult forms based on when symptoms start and how severe they are. However, diagnosing it can be tricky because its symptoms overlap with many other neurological and metabolic conditions.

Whole exome sequencing (WES) has emerged as a powerful tool in situations where clinical symptoms don't point clearly to a specific diagnosis. WES allows scientists to look at all the protein-coding genes in a person's DNA at once, searching for the genetic mutations that might be causing the disease. By coupling WES with chromosomal microarray analysis (CMA), the search can be narrowed to specific regions of the genome that are likely to contain the disease-causing gene.

Now, a team of researchers present a compelling case: Three patients from a consanguineous Moroccan family, affected by GM1-gangliosidosis, experienced a long and difficult path to diagnosis due to the disease's unusual onset and atypical presentation on brain scans. The power of WES and chromosomal microarray genotyping were combined to uncover the underlying genetic cause.

The Diagnostic Journey: From Clinical Confusion to Genetic Clarity

Intricate artwork depicting genetic mutations within a brain network.

For years, the family sought answers as their children developed progressive neurological issues. The eldest, a 17-year-old, experienced seizures and cognitive decline after a seemingly normal early childhood. His younger twin sisters displayed similar symptoms, including walking difficulties, falls, and progressive psychomotor deterioration. Brain MRIs revealed a troubling pattern of diffuse brain atrophy, but the underlying cause remained elusive.

Conventional diagnostic methods fell short, and the family turned to advanced genetic techniques. Researchers performed chromosomal microarray analysis (CMA) to identify regions of the genome shared among the affected siblings. This narrowed the search to three key areas on chromosomes 3, 13, and 15. Next, whole exome sequencing (WES) was conducted on one of the patients and her father. By focusing on the linked loci, the team was able to sift through vast amounts of genetic data efficiently.

  • CMA and WES Combination: CMA identified shared regions, and WES pinpointed the GLB1 mutation within those regions.
  • GLB1 Mutation Discovery: The p.Arg201Cys mutation in GLB1, known for causing GM1-gangliosidosis type II, was found in all three affected siblings.
  • Sanger Sequencing Validation: Sanger sequencing confirmed the presence and inheritance pattern of the GLB1 mutation in the family members.
Outside the linked loci, another mutation was found: a heterozygous EXOSC8 p.Ser272Thr mutation in all three patients and their mother. This mutation is associated with pontocerebellar hypoplasia type 1C and could have acted as a modifying factor, worsening the brain atrophy seen in the patients. The study marks the identification of the first GLB1 mutation in North Africa among patients with atypical brain-MRI outcomes.

Precision Diagnosis and the Future of Rare Disease Research

This study underscores the importance of advanced genetic tools like WES and CMA in diagnosing rare diseases, especially when clinical presentations are complex or atypical. For the Moroccan family, the combination of these technologies brought an end to a long diagnostic odyssey and shed light on the genetic basis of their children's condition.

The identification of the GLB1 mutation and the potential modifying role of the EXOSC8 mutation provides valuable insights into the genetic landscape of GM1-gangliosidosis. Furthermore, it expands the known clinical spectrum of the disease by highlighting the occurrence of unusual brain-MRI outcomes.

As genetic sequencing becomes more accessible, it holds immense promise for improving the diagnosis and management of rare genetic disorders, ultimately bringing hope and clarity to affected individuals and families worldwide. This case underscores the crucial role of WES in assessing patients with undiagnosed diseases and generally all neurogenetic diseases with high clinical heterogeneity.

About this Article -

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This article is based on research published under:

DOI-LINK: 10.1155/2018/8635698, Alternate LINK

Title: Genetic Analysis Of Undiagnosed Juvenile Gm1-Gangliosidosis By Microarray And Exome Sequencing

Subject: General Medicine

Journal: Case Reports in Genetics

Publisher: Hindawi Limited

Authors: Ahmed Bouhouche, Houyam Tibar, Yamna Kriouale, Mohammed Jiddane, Imane Smaili, Naima Bouslam, Ali Benomar, Mohamed Yahyaoui, Elmostafa El Fahime

Published: 2018-11-15

Everything You Need To Know

1

What exactly is GM1-gangliosidosis, the condition that was finally diagnosed in the Moroccan family?

GM1-gangliosidosis is a rare, inherited disorder where the body cannot properly break down certain fatty substances. This leads to a buildup of these substances, primarily in the brain and nervous system, causing damage. The condition is classified into infantile, juvenile, and adult forms based on the age of onset and severity of symptoms.

2

What is whole exome sequencing (WES), and how does it help in diagnosing rare diseases?

Whole exome sequencing (WES) is a powerful genetic test that analyzes all of the protein-coding genes (the exome) in an individual's DNA to identify genetic mutations that may be causing a disease. It is particularly useful when clinical symptoms do not clearly point to a specific diagnosis, allowing for a broad search of potential genetic causes.

3

What is chromosomal microarray analysis (CMA), and how is it used in conjunction with whole exome sequencing (WES)?

Chromosomal microarray analysis (CMA) is a genetic test that detects chromosomal abnormalities, such as deletions or duplications of DNA segments. In the context of diagnosing genetic disorders, CMA helps to narrow down the regions of the genome that may contain disease-causing genes, especially when combined with whole exome sequencing (WES). CMA provides a broad overview of the genome's structure, complementing the detailed gene-level analysis of WES.

4

How did the combination of chromosomal microarray analysis (CMA) and whole exome sequencing (WES) lead to the diagnosis of GM1-gangliosidosis in the Moroccan family?

In the Moroccan family, chromosomal microarray analysis (CMA) identified shared regions on chromosomes 3, 13, and 15 among the affected siblings. Subsequent whole exome sequencing (WES) revealed a mutation in the GLB1 gene, specifically the p.Arg201Cys mutation, known to cause GM1-gangliosidosis type II. Sanger sequencing was then used to confirm the presence and inheritance pattern of this GLB1 mutation in the family members.

5

Besides the GLB1 mutation responsible for GM1-gangliosidosis, another mutation in EXOSC8 was found. What implications does the EXOSC8 mutation have for these patients?

The identification of the heterozygous EXOSC8 p.Ser272Thr mutation, associated with pontocerebellar hypoplasia type 1C, suggests that this mutation could have acted as a modifying factor in the patients, potentially worsening the brain atrophy observed. While the GLB1 mutation explains the underlying GM1-gangliosidosis, the EXOSC8 mutation highlights the complexity of genetic interactions and how multiple genetic factors can influence the presentation and severity of a rare disease.

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