Microscopic bacterium with glowing armor in a sterile hospital.

Superbugs on the Rise: Are Hospitals Doing Enough to Stop Them?

"A new study reveals the concerning spread of carbapenem-resistant Pseudomonas aeruginosa in Port Elizabeth hospitals, highlighting the urgent need for better infection control."


In today's world, infections are becoming increasingly difficult to treat. One major reason is the rise of antibiotic-resistant bacteria, often called "superbugs." Among these, Pseudomonas aeruginosa stands out as a tough opponent, especially when it develops resistance to carbapenems, a powerful class of antibiotics used as a last resort. Carbapenem-resistant Pseudomonas aeruginosa (CRPA) poses a significant threat in hospital settings, making infections harder to manage and increasing the risk to patients.

Resistance to carbapenems can arise in several ways, including changes in the bacteria's genes that affect drug entry or removal, and the production of enzymes called carbapenemases that break down the antibiotics. Understanding how these resistance mechanisms spread is crucial for developing effective strategies to combat them.

A recent study investigated the prevalence and genetic characteristics of CRPA in hospitals in Port Elizabeth, South Africa. By identifying the genes responsible for carbapenem resistance and analyzing the genetic relatedness of different CRPA isolates, the researchers aimed to shed light on the extent of the problem and inform infection control efforts.

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Hospital Burden and Global AMR

The CDC says it uses multiple data sources and systems to track antimicrobial resistance in the United States and abroad, while WHO’s AMR data portal tracks human-health indicators of national and global responses. WHO warns that without harmonized, immediate global action, common infections could again become fatal in a post-antibiotic era. A 2024 review identifies Pseudomonas aeruginosa and methicillin-resistant organisms among the superbugs commonly found in hospital settings, and reports prolonged hospitalization, prior antibiotic therapy, and patient comorbidities among associated risk factors.

Detection and Treatment Constraints

Culture-based methods remain a prominent approach to detecting antimicrobial resistance, but a 2024 review says current detection techniques can be limited in sensitivity, turnaround time, and their ability to identify all potential resistance genes. The broader response is also constrained by limited antibiotic development: a 2025 review reports that pharmaceutical companies’ discontinuation of research has hindered development of new agents while multidrug-resistant pathogens worsen the problem. Another review identifies inadequate infection control, incorrect antibiotic use, and restricted drug development among factors behind the rapid spread of resistance.

Decoding the Superbug: Genes and Spread

Microscopic bacterium with glowing armor in a sterile hospital.

The study, conducted between March and August 2015, examined 234 Pseudomonas aeruginosa isolates from patients in Port Elizabeth hospitals. Of these, 81 were found to be resistant to carbapenems. Further investigation revealed that 15 of these CRPA isolates carried the blavIM-2 gene, which encodes a carbapenemase enzyme.

To understand the genetic relationships between these blavIM-2-positive isolates, the researchers used a technique called multilocus sequence typing (MLST). This method analyzes the DNA sequences of several housekeeping genes to create a genetic fingerprint for each isolate.

  • Six novel sequence types were identified among the blavIM-2-positive isolates.
  • A majority of the isolates (9/15) shared an identical genetic profile, provisionally designated as ST1.
  • Five of these ST1 isolates were from patients in the same hospital ward, suggesting a potential environmental reservoir of the bacteria.
  • The remaining CRPA isolates, which did not carry the blavIM-2 gene, likely developed carbapenem resistance through other mechanisms.
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Recent Findings on Pseudomonas Resistance

A 2026 systematic review and meta-analysis of Pseudomonas aeruginosa in Africa reported a pooled resistance rate of 54.4% across antibiotic classes (95% CI: 45.6–63.0), with resistance reaching 100% for tetracyclines and glycylcyclines. A separate meta-analysis of colistin resistance reported regional P. aeruginosa rates of 20.73% in East Africa, 10.85% in North Africa, and 7.19% in Southern Africa. In a cross-sectional study conducted from March 2021 to March 2022, researchers collected 108 non-duplicate drug-resistant P. aeruginosa isolates from burn patients at Amir-Al-Momenin Hospital in Shiraz, Southern Iran.

Evidence Limits in South African Hospitals

A study of carbapenem-resistant Pseudomonas aeruginosa isolates from patients presenting at hospitals in Port Elizabeth, South Africa, reports diverse sequence types across the hospitals. Its authors say this highlights the occurrence of widespread carbapenem-resistant P. aeruginosa isolates. They also acknowledge limitations in sample size and available clinical information, which constrain how fully the findings can characterize the cases.

Typing Methods and Alternative Strategies

A study of Helicobacter suis found that results from six additional genes placed different isolates into different sequence types, indicating that the study’s multilocus sequence typing scheme had sufficient discriminatory power. Separately, Harvard Health describes judicious antibiotic use as key to controlling antibiotic-resistant bacteria and the rise of superbugs. It also reports that reducing antibiotics in the environment and food chain should reduce their spread to humans, and that phage therapy deployment in animal farming in France is expected to generate more evidence about its efficacy as an alternative to antibiotics.

These findings highlight the concerning presence and potential spread of CRPA within the studied hospitals. The identification of a potential environmental reservoir underscores the importance of stringent infection control measures to prevent further transmission.

Fighting Back Against Superbugs: What Can Be Done?

The study's results emphasize the urgent need for improved infection control practices in healthcare facilities. These practices include:

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Resistance Profiles and Global Stakes

A 2026 article reports that resistance-related profiles can detect overexpression of efflux pumps, β-lactamase enzymes, porins, and stress-response pathways that contribute directly to resistance phenotypes. Another source reports an estimate of 700,000 deaths globally each year from antibiotic resistance and says the United Nations estimates that superbugs and associated multidrug resistance are projected to ... by 2050; the supplied excerpt does not include the projected figure or outcome. A separate review describes superbugs as pathogens resistant to multiple antibiotics and says antimicrobial resistance threatens to undo decades of medical progress.

Health Consequences and Fewer Treatment Options

A review describes antibiotic resistance as a major global threat to effective treatment of bacterial infections and reports adverse effects on clinical and therapeutic outcomes. The term “superbug” is informal and does not mean a bacterium is invincible; it generally refers to bacteria resistant to multiple antibiotics, leaving doctors with fewer effective treatment options. A 2025 review frames AMR and superbugs through a One Health lens, considering effects on human, animal, and environmental health as well as factors that drive resistance.

<ul> <li>Enhanced hygiene protocols: Frequent and thorough handwashing, surface disinfection, and equipment sterilization.</li> <li>Antibiotic stewardship: Judicious use of antibiotics to minimize the selection pressure that drives resistance.</li> <li>Surveillance and screening: Monitoring the prevalence of CRPA and screening high-risk patients to identify and isolate carriers.</li> <li>Environmental monitoring: Regular testing of hospital environments to detect and eliminate reservoirs of CRPA.</li> </ul>

By implementing these measures, hospitals can help curb the spread of CRPA and protect vulnerable patients from these increasingly challenging infections. Further research is needed to fully understand the transmission dynamics of CRPA and develop novel strategies to combat antibiotic resistance.

What limits the conclusions from these isolates

  • The screening focused on common carbapenemases, so other carbapenemase genes could have gone undetected.[1]
  • Because the detected gene occurred in only part of the resistant group, its presence alone cannot explain resistance across all the isolates.[1]
  • The authors said the occurrence of carbapenemase genes and the isolates’ relatedness in these public facilities warrant additional investigation.[1]

How researchers assessed resistant isolates in Port Elizabeth hospitals

Sample size234 total isolates; 81 carbapenem-resistant isolates.[2]
SettingPublic hospitals in Port Elizabeth, South Africa.[2]
DurationMarch to August 2015.[2]
Main outcomeIncidence of carbapenemase-producing genes and genetic relatedness of carbapenem-resistant P. aeruginosa isolates by MLST.[2]
Effect sizeblaVIM-2 was detected in 15 of 81 carbapenem-resistant isolates.[2]
Times cited11[2]

How this study fits with other resistance research

A hospital study in Daejeon, Korea, found metallo-β-lactamase production in 25 of 61 carbapenem-resistant P. aeruginosa isolates, offering a comparison for the Port Elizabeth gene findings.[1]

A clinical-isolate study in Spain reported carbapenem resistance in 39% of its P. aeruginosa isolates, a prevalence measure that can be compared with the proportion in this study while recognizing the different settings.[1]

The Port Elizabeth paper itself interpreted the sequence-type diversity across hospitals as evidence of widespread occurrence, while acknowledging limits in sample size and clinical information.[1]

What remains unresolved about the Port Elizabeth isolates

  • What resistance mechanisms account for the carbapenem-resistant isolates that tested negative for blaVIM-2?[1]
  • How much do the sequence types observed across hospitals reflect transmission between patients, rather than separate sources or other processes?[1]

Short answers about the study

What other antibiotic susceptibilities did the researchers report?

Among the blaVIM-2-negative carbapenem-resistant isolates, the paper reported susceptibility to most tested drugs relative to the VIM-positive isolates. It also reported susceptibility to amikacin, gentamicin, and ciprofloxacin in a number of carbapenem-resistant isolates.[1]

Terms used in the study

Mobile genetic elements
Genetic elements that can carry carbapenemase genes between bacterial strains and species.[1]

About this Article -

Written with AI assistance from published research, and reviewed by the Mystum team. See our About page for more information.

This article is based on research published under:

DOI-LINK: 10.21010/ajid.v11i2.9, Alternate LINK

Title: Multilocus Sequence Typing Of Carbapenem Resistant Pseudomonas Aeruginosa Isolates From Patients Presenting At Port Elizabeth Hospitals, South Africa

Subject: Infectious Diseases

Journal: African Journal of Infectious Diseases

Publisher: African Traditional Herbal Medicine Supporters Initiative (ATHMSI)

Authors: Annear D, Black J, Govender S

Published: 2017-06-08

Everything You Need To Know

1

What is Carbapenem-resistant Pseudomonas aeruginosa (CRPA), and why is it a concern?

Carbapenem-resistant Pseudomonas aeruginosa (CRPA) is a type of bacteria that has developed resistance to carbapenems, a class of powerful antibiotics. This resistance makes infections caused by CRPA more difficult to treat, as carbapenems are often used as a last resort. Its significance lies in the context of hospitals, where CRPA can spread rapidly, posing a significant threat to patient health and potentially leading to increased mortality rates. The implications include prolonged hospital stays, increased healthcare costs, and the potential for untreatable infections.

2

What did the study investigate regarding the spread of drug-resistant bacteria?

The study focused on the spread of Carbapenem-resistant Pseudomonas aeruginosa (CRPA) in hospitals in Port Elizabeth. The study examined 234 Pseudomonas aeruginosa isolates, with 81 of them being resistant to carbapenems. The investigation looked into the genes responsible for the resistance and analyzed the genetic relationships between the isolates. The study identified the blavIM-2 gene in 15 of the CRPA isolates. It is significant as it provides insight into the mechanisms of resistance and the spread of the bacteria within a healthcare setting. The implication is the need for stringent infection control measures to prevent further transmission and improve patient outcomes.

3

What is the blavIM-2 gene, and why is it important?

The blavIM-2 gene is a gene found in some strains of Carbapenem-resistant Pseudomonas aeruginosa (CRPA) that produces an enzyme called carbapenemase. This enzyme breaks down carbapenem antibiotics, rendering them ineffective. In the study, 15 of the CRPA isolates were found to carry this gene. Its presence is significant because it directly contributes to antibiotic resistance, making infections more challenging to treat. The implications are that infections caused by bacteria carrying the blavIM-2 gene may not respond to carbapenem treatment, potentially leading to treatment failures and increased risk to patients.

4

What is Multilocus sequence typing (MLST), and why was it used in this research?

Multilocus sequence typing (MLST) is a method used to analyze the DNA sequences of several housekeeping genes within bacteria to create a genetic fingerprint for each isolate. Researchers used this technique to examine the Carbapenem-resistant Pseudomonas aeruginosa (CRPA) isolates. This process helped identify the genetic relationships between different CRPA strains. This method is significant because it allows researchers to track the spread of CRPA within hospitals and identify potential sources of infection. The implications involve the ability to understand how CRPA is transmitted, which can help inform the implementation of targeted infection control strategies to prevent further spread.

5

What is the significance of the study's findings, and what actions are needed?

The study's findings highlight the critical need for enhanced infection control practices in healthcare facilities to combat the spread of Carbapenem-resistant Pseudomonas aeruginosa (CRPA). Stringent measures include hand hygiene, environmental cleaning, and appropriate use of antibiotics to prevent the emergence and spread of resistant bacteria. This is very significant because healthcare settings are environments where these bacteria can easily spread. Implications include the necessity for healthcare workers to adhere to strict protocols to prevent the transmission of CRPA. Improved infection control can reduce the risk of infections and improve patient outcomes.

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